TopoMetry
Getting started:
Installation and dependencies
Optional dependencies
Mathematical Details
Tutorials:
Introduction to the TopoMetry analysis and report
TopoMetry — Step-by-Step Analysis
TopoMetry — Multi-Batch Integration
API:
TopOGraph
API Reference
topo
TopoMetry
API Reference
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API Reference
This page contains auto-generated API reference documentation
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topo
topo.base
topo.base.ann
topo.base.dists
topo.base.sparse
topo.eval
topo.eval.global_scores
topo.eval.local_scores
topo.eval.rmetric
topo.eval.topo_metrics
topo.layouts
topo.layouts.graph_utils
topo.layouts.isomap
topo.layouts.map
topo.layouts.projector
topo.pipes
topo.plot
topo.single_cell
topo.spectral
topo.spectral._spectral
topo.spectral.eigen
topo.spectral.umap_layouts
topo.topograph
topo.tpgraph
topo.tpgraph.cknn
topo.tpgraph.fuzzy
topo.tpgraph.intrinsic_dim
topo.tpgraph.kernels
topo.utils
topo.utils._utils
topo.utils.umap_utils
topo.version