TopoMetry Logo

Getting started:

  • Installation and dependencies
  • Optional dependencies
  • Mathematical Details

Tutorials:

  • Introduction to the TopoMetry analysis and report
  • TopoMetry — Step-by-Step Analysis
  • TopoMetry — Multi-Batch Integration

API:

  • TopOGraph
  • API Reference
    • topo
TopoMetry
  • API Reference
  • Edit on GitHub

API Reference

This page contains auto-generated API reference documentation [1].

  • topo
    • topo.base
      • topo.base.ann
      • topo.base.dists
      • topo.base.sparse
    • topo.eval
      • topo.eval.global_scores
      • topo.eval.local_scores
      • topo.eval.rmetric
      • topo.eval.topo_metrics
    • topo.layouts
      • topo.layouts.graph_utils
      • topo.layouts.isomap
      • topo.layouts.map
      • topo.layouts.projector
    • topo.pipes
    • topo.plot
    • topo.single_cell
    • topo.spectral
      • topo.spectral._spectral
      • topo.spectral.eigen
      • topo.spectral.umap_layouts
    • topo.topograph
    • topo.tpgraph
      • topo.tpgraph.cknn
      • topo.tpgraph.fuzzy
      • topo.tpgraph.intrinsic_dim
      • topo.tpgraph.kernels
    • topo.utils
      • topo.utils._utils
      • topo.utils.umap_utils
    • topo.version
[1]

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